IFR

Theoretical Systems Biology

 

 

 

 

 

 

 

Thomas Wilhelm

Theoretical Systems Biology
Institute of Food Research
Norwich Research Park
Colney
Norwich NR4 7UA
U.K.

Tel:    +44 (0)1603 255313
Email: thomas.wilhelm@ifr.ac.uk

That's me.

 

 


"Enthusiasm always and necessarily prevails over those who are not enthusiastic."

JG Fichte

(Es siegt immer und notwendig die Begeisterung ueber den, der nicht begeistert ist.)

 

Research Interests

My research interests are partly built on my general interest in 'the big questions': Why is it as it is?  What is the role of man in the whole thing? Fritjof Capra's well-known books The Tao of  Physics (1975) and The Turning Point (1982) build some bridges between such questions and detailed scientific projects. Interestingly, already Capra uses the term Systems Biology, my main research field. Like Capra, I like to think as 'holistic' as possible and useful. I work on all fields in Systems Biology, i.e. data integration, statistical analyses and dynamic modelling, collaborating with groups in our institute (Institute of Food Research), groups from the Norwich Research Park (John Innes Centre, The Sainsbury Laboratory, University of East Anglia) and beyond. Our research covers genomics, transcriptomics, proteomics and metabolomics.

CV

Diploma (M.Sc.): Biophysics, Humboldt-University Berlin (1992)
Ph.D.: Theoretical Biophysics (Supervisor: Reinhard Heinrich), Humboldt-University Berlin (1997)
Postdoc 1: Institute of Physics (Chair: Peter Hänggi), University of Augsburg (1997-1999)
Postdoc 2: Institute of Freshwater Ecology (IGB), Berlin (1999-2002)
Junior research group leader: Fritz-Lipman Institute of Age Research (FLI), Jena (2002-2007)
Senior research group leader: Institute of Food Research (IFR), Norwich (2007-present)

Editorial

Program Committee: BIDM/DEXA 2007, GCB 2008, NetSci 2008, BIOINFORMATICS 2010,2011
Journal Referee: Advances in Complex Systems, AI Communications, Annalen der Physik, Bioinformatics, BioSystems, BMC Bioinformatics, BMC Evolutionary Biology, BMC Research Notes, BMC Systems Biology, Cell Biochemistry and Biophysics, Complexity, Gene, Genome Biology, IET Systems Biology, Journal of Mathematical Chemistry, Journal of  Molecular Evolution, Journal of Theoretical Biology, Molecular Microbiology, Molecular Systems Biology, Physica A,  Physical Review E, Physical Review Letters, PLoS Computational Biology, PLoS One, Proceedings of The Royal Society B, Wiley Interdisciplinary Reviews: Systems Biology and Medicine 
Grant Referee: Biotechnology and Biological Sciences Research Council (BBSRC, UK), Centre Européen de Calcul Atomique et Moléculaire (CECAM, Switzerland), Deutsche Forschungsgemeinschaft (DFG, Germany), Dutch National Science Foundation (NOW, Netherlands), Icelandic Centre for Research  

Tools

  • DiProGB     - a genome browser considering physical properties of nucleic acids.
  • DASS-GUI - a user interface for data mining (and biclustering).

Selected Publications

  • J. Hollunder, M. Friedel, M. Kuiper, T. Wilhelm. DASS-GUI: a user interface for identification and analysis of significant patterns in non-sequential data. Bioinformatics 26 (2010) 987-989.
  • T. Wilhelm. The smallest chemical reaction system with bistability. BMC  Systems Biology 3 (2009) 90. Origin of life.
  • M. Friedel, S. Nikolajewa, J. Sühnel, T. Wilhelm. DiProGB: the dinucleotide properties genome browser. Bioinformatics 25 (2009) 2603-2604.
  • T. Wilhelm. Analysis of structures causing instabilities. Phys. Rev. E 76 (2007) 011911.
  • R. Brockmann, A. Beyer, J.J. Heinisch, T. Wilhelm. Post-transcriptional expression regulation: What determines translation rates? PLoS Comput. Biol. 3 (2007) 531-539.
  • T. Wilhelm, P. Hänggi. Power-law distributions resulting from finite resources. Physica A 329 (2003) 499-508.
    -> Our world is not just red queen, but also wu wei.
  • T. Wilhelm, R. Brüggemann. Goal functions for the development of natural systems. Ecol. Model. 132 (2000) 231-246.

         

 

   

 

 

 

All Publications